recipe salmon

Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

Homepage

https://github.com/COMBINE-lab/salmon

License

GPLv3

Recipe

/salmon/meta.yaml

package salmon

(downloads) docker_salmon

Versions

0.14.1-1, 0.14.1-0, 0.14.0-1, 0.14.0-0, 0.13.1-0, 0.13.0-2, 0.13.0-1, 0.12.0-1, 0.11.3-2, 0.11.3-1, 0.11.2-0, 0.11.1-0, 0.11.0-0, 0.10.2-3, 0.10.2-1, 0.10.1-1, 0.10.0-1, 0.9.1-1, 0.9.1-0, 0.9.0-0, 0.8.2-1, 0.8.2-0, 0.8.1-0, 0.8.0-0, 0.7.2-3, 0.7.2-2, 0.6.0-2, 0.6.0-1, 0.6.0-0, 0.5.1-0

Depends
  • bzip2 >=1.0.6,<2.0a0

  • icu >=58.2,<59.0a0

  • jemalloc >=5.1.0

  • libboost

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • tbb >=2019.7

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install salmon

and update with:

conda update salmon

or use the docker container:

docker pull quay.io/biocontainers/salmon:<tag>

(see salmon/tags for valid values for <tag>)