recipe salmon

Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Homepage

https://github.com/COMBINE-lab/salmon

License

GPLv3

Recipe

/salmon/meta.yaml

Links

biotools: salmon, doi: 10.1038/nmeth.4197

package salmon

(downloads) docker_salmon

Versions
1.3.0-01.2.1-01.2.0-01.1.0-01.0.0-00.15.0-00.14.2-10.14.2-00.14.1-2

1.3.0-01.2.1-01.2.0-01.1.0-01.0.0-00.15.0-00.14.2-10.14.2-00.14.1-20.14.1-10.14.1-00.14.0-10.14.0-00.13.1-00.13.0-20.13.0-10.12.0-10.11.3-20.11.3-10.11.2-00.11.1-00.11.0-00.10.2-30.10.2-10.10.1-10.10.0-10.9.1-10.9.1-00.9.0-00.8.2-10.8.2-00.8.1-00.8.0-00.7.2-30.7.2-20.6.0-20.6.0-10.6.0-00.5.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install salmon

and update with:

conda update salmon

or use the docker container:

docker pull quay.io/biocontainers/salmon:<tag>

(see salmon/tags for valid values for <tag>)