recipe sambamba

Tools for working with SAM/BAM data

Homepage

https://github.com/biod/sambamba

License

GPLv2

Recipe

/sambamba/meta.yaml

package sambamba

(downloads) docker_sambamba

Versions

0.7.0-1, 0.7.0-0, 0.6.9-0, 0.6.8-2, 0.6.8-1, 0.6.8-0, 0.6.6-2, 0.6.6-1, 0.6.6-0, 0.6.5-0, 0.6.3-0, 0.6.2-0, 0.6.1-0, 0.5.9-1, 0.5.9-0

Depends bzip2

>=1.0.6,<2.0a0

Depends htslib

>=1.9,<1.10.0a0

Depends ldc

1.10.*

Depends libgcc-ng

>=7.3.0

Depends xz

>=5.2.4,<5.3.0a0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sambamba

and update with:

conda update sambamba

or use the docker container:

docker pull quay.io/biocontainers/sambamba:<tag>

(see sambamba/tags for valid values for <tag>)