samblaster

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A tool to mark duplicates and extract discordant and split reads from sam files.

Home https://github.com/GregoryFaust/samblaster
Versions 0.1.22, 0.1.23, 0.1.24
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/samblaster

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install samblaster

and update with:

conda update samblaster

docker

A Docker container is available at https://quay.io/repository/biocontainers/samblaster.