recipe saspector

A tool for analysis of missing regions in (bacterial) draft genomes.

Homepage:

https://github.com/alejocrojo09/SASpector

License:

MIT

Recipe:

/saspector/meta.yaml

package saspector

Versions:

0.0.5-0,  0.0.3-0,  0.0.1-0

Depends:

• biopython

• blast

• matplotlib-base

• numpy

• pandas

• progressbar

• progressivemauve

• prokka

• python >3

• quast

• samtools

• seaborn

• sourmash

• trf

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install saspector

and update with:

conda update saspector

or use the docker container:

docker pull quay.io/biocontainers/saspector:<tag>

(see saspector/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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