recipe savage

SAVAGE (Strain Aware VirAl GEnome assembly) reconstructs individual (viral) haplotypes from a mixed sample.

Homepage

https://bitbucket.org/jbaaijens/savage

License

GPL v3

Recipe

/savage/meta.yaml

package savage

Versions

0.4.1-0, 0.4.0-2, 0.4.0-1, 0.4.0-0, 0.3.0-0, 0.2.1-1, 0.2.1-0

Depends

• boost >=1.68.0,<1.68.1.0a0

• bwa

• kallisto >=0.43.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• python >=2.7,<2.8.0a0

• rust-overlaps

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install savage

and update with:

conda update savage

or use the docker container:

docker pull quay.io/biocontainers/savage:<tag>

(see savage/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/savage/README.html)