recipe savage

SAVAGE (Strain Aware VirAl GEnome assembly) reconstructs individual (viral) haplotypes from a mixed sample.

Homepage

https://github.com/HaploConduct/HaploConduct/tree/master/savage

License

GPL v3

Recipe

/savage/meta.yaml

package savage

Versions

0.4.2-1,  0.4.2-0,  0.4.1-0,  0.4.0-2,  0.4.0-1,  0.4.0-0,  0.3.0-0,  0.2.1-1,  0.2.1-0

Depends

• boost >=1.70.0,<1.70.1.0a0

• bwa

• kallisto >=0.43.0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• rust-overlaps

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install savage

and update with:

conda update savage

or use the docker container:

docker pull quay.io/biocontainers/savage:<tag>

(see savage/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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