recipe scallop2

A reference-based transcript assembler optimized for paired-/multiple-end RNA-seq data.

Homepage:

https://github.com/Shao-Group/scallop2

License:

BSD-3-Clause

Recipe:

/scallop2/meta.yaml

package scallop2

Versions:

1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-0

Depends:

• boost-cpp >=1.74.0,<1.74.1.0a0

• htslib >=1.14,<1.15.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install scallop2

and update with:

conda update scallop2

or use the docker container:

docker pull quay.io/biocontainers/scallop2:<tag>

(see scallop2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scallop2/README.html)