recipe scalpel

Sensitive detection of INDELs (INsertions and DELetions)

Homepage:

http://scalpel.sourceforge.net/

License:

MIT

Recipe:

/scalpel/meta.yaml

package scalpel

Versions:

0.5.4-5,  0.5.4-4,  0.5.4-3,  0.5.4-2,  0.5.4-1,  0.5.4-0,  0.5.3-2,  0.5.3-1,  0.5.3-0, 

0.5.4-5,  0.5.4-4,  0.5.4-3,  0.5.4-2,  0.5.4-1,  0.5.4-0,  0.5.3-2,  0.5.3-1,  0.5.3-0,  0.5.1-3,  0.5.1-2,  0.5.1-1,  0.5.1-0

Depends:

• bamtools

• bcftools

• libgcc-ng >=12

• libstdcxx-ng >=12

• perl

• samtools

Required By:

• somaticseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install scalpel

and update with:

conda update scalpel

or use the docker container:

docker pull quay.io/biocontainers/scalpel:<tag>

(see scalpel/tags for valid values for <tag>)

Download stats

Link to this page

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