recipe scapp

Plasmid assembly in metagenomes

Homepage

https://github.com/Shamir-Lab/SCAPP

License

MIT / MIT

Recipe

/scapp/meta.yaml

package scapp

Versions

0.1.4-0,  0.1.3-1,  0.1.3-0

Depends

• blast >=2.10.1

• bwa

• networkx 2.4.*

• plasclass

• pysam 0.15.3.*

• python >=3.7

• samtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scapp

and update with:

conda update scapp

or use the docker container:

docker pull quay.io/biocontainers/scapp:<tag>

(see scapp/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scapp/README.html)