recipe scirpy

A Scanpy extension for analyzing single-cell T-cell and B-cell receptor (TCR/BCR) sequencing data.

Homepage:

https://icbi-lab.github.io/scirpy

Developer docs:

https://github.com/icbi-lab/scirpy

License:

BSD / BSD-3

Recipe:

/scirpy/meta.yaml

Links:

doi: 10.1101/2020.04.10.035865

package scirpy

Versions:

0.12.2-0,  0.12.1-0,  0.12.0-0,  0.11.2-0,  0.11.1-0,  0.11.0-0,  0.10.1-0,  0.10.0-0,  0.9.1-0, 

0.12.2-0,  0.12.1-0,  0.12.0-0,  0.11.2-0,  0.11.1-0,  0.11.0-0,  0.10.1-0,  0.10.0-0,  0.9.1-0,  0.9.0-0,  0.8.0-0,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.2-0,  0.4.1-0,  0.4-0,  0.3-0,  0.2-0,  0.1.2-0,  0.1.1-0

Depends:

• adjusttext >=0.7

• airr >=1.2

• anndata >=0.7.6

• networkx >=2.5

• numba >=0.41.0

• numpy >=0.17.0

• pandas >=1.5,<2

• parasail-python

• python >=3.7

• python-igraph >0.10.1|<0.10.0

• python-levenshtein

• scanpy >=1.6.0

• scikit-learn

• scipy

• squarify

• tqdm >=4.44.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install scirpy

and update with:

conda update scirpy

or use the docker container:

docker pull quay.io/biocontainers/scirpy:<tag>

(see scirpy/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scirpy/README.html)