recipe scop3p

The official Scop3P REST API Python client

Homepage:

https://iomics.ugent.be/scop3p/

Documentation:

https://iomics.ugent.be/scop3p/documentation

Developer docs:

https://github.com/Bio2Byte/scop3p-api-client

License:

Apache-2.0

Recipe:

/scop3p/meta.yaml

Links:

doi: 10.5281/zenodo.18909477, doi: 10.1021/acs.jproteome.0c00306

Scop3P provides a unique and powerful resource to explore and understand the impact of phospho-sites on human protein structure and function, and can thus serve as a springboard for researchers seeking to analyse and, interpret a given phospho-site or phosphoprotein in a structural, biophysical, and biological context.

package scop3p

(downloads) docker_scop3p

versions:

1.1.0-0

depends python:

>=3.6

depends requests:

>=2.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install scop3p

and update with::

   mamba update scop3p

To create a new environment, run:

mamba create --name myenvname scop3p

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/scop3p:<tag>

(see `scop3p/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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