recipe scran-cli

A set of wrappers for individual components of the scran R package. Scran implements functions for low-level analyses of single-cell RNA-seq data.Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing.

Homepage:

https://github.com/ebi-gene-expression-group/scran-cli

License:

Apache / Apache 2

Recipe:

/scran-cli/meta.yaml

package scran-cli

Versions:

0.0.1-0,  v0.0.1-1,  v0.0.1-0

Depends:

• bioconductor-scran 1.12.1.*

• dropletutils-scripts

• r-igraph

• r-optparse

• r-workflowscriptscommon

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install scran-cli

and update with:

conda update scran-cli

or use the docker container:

docker pull quay.io/biocontainers/scran-cli:<tag>

(see scran-cli/tags for valid values for <tag>)

Download stats

Link to this page

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