recipe segtools

a python package for analyzing genomic segmentations

Homepage:

http://segtools.hoffmanlab.org/

License:

GPL2

Recipe:

/segtools/meta.yaml

Links:

doi: 10.1186/1471-2105-12-415

package segtools

versions:

1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.1.14-2, 

1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.1.14-2,  1.1.14-1,  1.1.14-0

depends genomedata:

depends gmtk:

depends graphviz:

depends numpy:

depends pygraphviz:

depends python:

depends r-base:

depends r-cairo:

depends r-cluster:

depends r-latticeextra:

depends r-reshape2:

depends rpy2:

>=2.6.0

depends textinput:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install segtools

and update with::

   mamba update segtools

To create a new environment, run:

mamba create --name myenvname segtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/segtools:<tag>

(see `segtools/tags`_ for valid values for ``<tag>``)

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