recipe segtools

a python package for analyzing genomic segmentations

Homepage

http://segtools.hoffmanlab.org/

License

GPL2

Recipe

/segtools/meta.yaml

Links

doi: 10.1186/1471-2105-12-415

package segtools

Versions

1.2.4-0,  1.2.3-0,  1.2.2-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.1.14-2,  1.1.14-1,  1.1.14-0

Depends

• genomedata

• gmtk

• graphviz

• numpy

• pygraphviz

• python

• r-base >=3.6,<3.7.0a0

• r-cairo

• r-cluster

• r-latticeextra

• r-reshape2

• rpy2 >=2.6.0

• textinput

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install segtools

and update with:

conda update segtools

or use the docker container:

docker pull quay.io/biocontainers/segtools:<tag>

(see segtools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/segtools/README.html)