recipe sepp

SATe-enabled phylogenetic placement

Homepage:

https://github.com/smirarab/sepp

License:

GPL3 / GPLv3

Recipe:

/sepp/meta.yaml

Links:

biotools: sepp

package sepp

(downloads) docker_sepp

versions:
4.5.1-44.5.1-34.5.1-24.5.1-14.5.1-04.4.0-04.3.10-24.3.10-04.3.9-0

4.5.1-44.5.1-34.5.1-24.5.1-14.5.1-04.4.0-04.3.10-24.3.10-04.3.9-04.3.8-0v4.5.0-0

depends dendropy:

<=4.5.1

depends hmmer:

3.1b2

depends openjdk:

depends pasta:

depends python:

>=3.8,<3.9.0a0

depends python_abi:

3.8.* *_cp38

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sepp

and update with::

   mamba update sepp

To create a new environment, run:

mamba create --name myenvname sepp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sepp:<tag>

(see `sepp/tags`_ for valid values for ``<tag>``)

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