recipe seq-to-first-iso

Compute first two isotopologues intensity from peptide sequence

Homepage

https://github.com/pierrepo/seq-to-first-iso

Documentation

https://seq-to-first-iso.readthedocs.io/

License

BSD / BSD 3-Clause License

Recipe

/seq-to-first-iso/meta.yaml

Seq-to-first-iso is a Python package that computes isotopologues M0 and M1 of peptides with a 99.99 % 12C enrichment for quantification by SLIM-labeling. It simulates auxotrophies by differentiating labelled and unlabelled amino acids.

package seq-to-first-iso

Versions

1.1.0-0,  1.0.0-0,  0.5.1-0,  0.5.0-0

Depends

• pandas

• pyteomics

• python >=3.6

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install seq-to-first-iso

and update with:

conda update seq-to-first-iso

or use the docker container:

docker pull quay.io/biocontainers/seq-to-first-iso:<tag>

(see seq-to-first-iso/tags for valid values for <tag>)

Download stats

Link to this page

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