- recipe seroba
SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.
- Homepage
- License
GPL / GPL3.0
- Recipe
SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references. You can use SeroBA to download references from (https://github.com/phe-bioinformatics/PneumoCaT) to do identify the capsular type of Streptococcus pneumoniae.
- package seroba¶
-
- Versions
1.0.2-0
,1.0.1-1
,1.0.1-0
,1.0.0-1
,1.0.0-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install seroba
and update with:
conda update seroba
or use the docker container:
docker pull quay.io/biocontainers/seroba:<tag>
(see seroba/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/seroba/README.html)