- recipe sga
SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
- Homepage:
- License:
GPL / GPLv3
- Recipe:
- Links:
biotools: sga
- package sga¶
-
- Versions:
0.10.15-8
,0.10.15-7
,0.10.15-6
,0.10.15-5
,0.10.15-4
,0.10.15-3
,0.10.15-2
,0.10.15-1
,0.10.15-0
,0.10.15-8
,0.10.15-7
,0.10.15-6
,0.10.15-5
,0.10.15-4
,0.10.15-3
,0.10.15-2
,0.10.15-1
,0.10.15-0
,0.10.13-0
- Depends:
bamtools
>=2.5.1,<2.5.2.0a0
libgcc-ng
>=12
libstdcxx-ng
>=12
libzlib
>=1.2.13,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install sga
and update with:
conda update sga
or use the docker container:
docker pull quay.io/biocontainers/sga:<tag>
(see sga/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/sga/README.html)