sga

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SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Home https://github.com/jts/sga
Versions 0.10.13
License GPLv3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/sga

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sga

and update with:

conda update sga

docker

A Docker container is available at https://quay.io/repository/biocontainers/sga.