recipe sga_ice

Iterative error correction of long 250 or 300 bp Illumina reads minimizes the total amount of erroneous reads, which improves contig assembly



MIT license



package sga_ice

(downloads) docker_sga_ice



depends python:

depends sga:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sga_ice

and update with::

   mamba update sga_ice

To create a new environment, run:

mamba create --name myenvname sga_ice

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `sga_ice/tags`_ for valid values for ``<tag>``)

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