- recipe sga_ice
Iterative error correction of long 250 or 300 bp Illumina reads minimizes the total amount of erroneous reads, which improves contig assembly
- package sga_ice¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install sga_ice and update with:: mamba update sga_ice
To create a new environment, run:
mamba create --name myenvname sga_ice
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/sga_ice:<tag> (see `sga_ice/tags`_ for valid values for ``<tag>``)