recipe shiba2sashimi

A utility for creating sashimi plot from Shiba output

Homepage:

https://github.com/Sika-Zheng-Lab/shiba2sashimi

License:

MIT

Recipe:

/shiba2sashimi/meta.yaml

A utility to create Sashimi plots, a publication-quality visualization of RNA-seq data, from Shiba output.

package shiba2sashimi

(downloads) docker_shiba2sashimi

versions:

0.1.2-0,  0.1.0-0

depends matplotlib-base:

>=3.1.0

depends numpy:

>=1.18.0,<2.0.0

depends pysam:

>=0.22.0

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install shiba2sashimi

and update with::

   mamba update shiba2sashimi

To create a new environment, run:

mamba create --name myenvname shiba2sashimi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/shiba2sashimi:<tag>

(see `shiba2sashimi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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