recipe shigeifinder

Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

Homepage

https://github.com/LanLab/ShigEiFinder

License

GPL3

Recipe

/shigeifinder/meta.yaml

package shigeifinder

Versions

1.3.2-0,  1.3.1-0,  1.2.0-0,  1.1.0-0

Depends

• blast >=2.9.0

• bwa >=0.7.17

• python >=3.7

• samtools >=1.10

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install shigeifinder

and update with:

conda update shigeifinder

or use the docker container:

docker pull quay.io/biocontainers/shigeifinder:<tag>

(see shigeifinder/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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