recipe short-read-connector

Short read connector enables the comparisons of two read sets

Homepage:

https://github.com/GATB/short_read_connector

License:

AGPL / AGPL-3.0

Recipe:

/short-read-connector/meta.yaml

package short-read-connector

(downloads) docker_short-read-connector

versions:

1.2.0-2,  1.2.0-1,  1.2.0-0

depends dsk:

>=2.3.3,<3.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install short-read-connector

and update with::

   mamba update short-read-connector

To create a new environment, run:

mamba create --name myenvname short-read-connector

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/short-read-connector:<tag>

(see `short-read-connector/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/short-read-connector/README.html)