recipe shortstack

ShortStack: Comprehensive annotation and quantification of small RNA genes

Homepage:

https://github.com/MikeAxtell/ShortStack

License:

MIT / MIT

Recipe:

/shortstack/meta.yaml

package shortstack

Versions:

4.0.2-0,  4.0.1-0,  4.0.0-0,  3.8.5-4,  3.8.5-3,  3.8.5-2,  3.8.5-1,  3.8.5-0,  3.8.3-0, 

4.0.2-0,  4.0.1-0,  4.0.0-0,  3.8.5-4,  3.8.5-3,  3.8.5-2,  3.8.5-1,  3.8.5-0,  3.8.3-0,  3.6-1,  3.6-0

Depends:

• bedtools

• biopython

• bowtie >=1.3.1

• cutadapt

• numpy

• python >=3.10.8

• samtools >=1.16

• shorttracks

• strucvis

• tqdm

• viennarna 2.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install shortstack

and update with:

conda update shortstack

or use the docker container:

docker pull quay.io/biocontainers/shortstack:<tag>

(see shortstack/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shortstack/README.html)