recipe simba

SIMBA - SIngle-cell eMBedding Along with features

Homepage:

https://github.com/pinellolab/simba

License:

BSD / BSD-3

Recipe:

/simba/meta.yaml

package simba

Versions:

1.1-0,  1.0-0,  0.1-0,  0.1a-0

Depends:

• adjusttext >=0.7.3

• anndata >=0.7.4

• kneed >=0.7

• matplotlib-base >=3.3

• numpy >=1.17.0

• pandas >=1.0,!=1.1

• pybedtools >=0.8.0

• pytables

• python

• scikit-learn >=0.19

• scikit-misc >=0.1.3

• scipy >=1.4

• seaborn >=0.11

• simba_pbg >=1.1

• umap-learn >=0.3.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install simba

and update with:

conda update simba

or use the docker container:

docker pull quay.io/biocontainers/simba:<tag>

(see simba/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/simba/README.html)