recipe simba_pbg

A customized PyTorch-BigGraph (PBG) package for `simba`

Homepage:

https://github.com/pinellolab/simba_pbg

License:

BSD / BSD-3

Recipe:

/simba_pbg/meta.yaml

package simba_pbg

versions:

1.2-2,  1.2-1,  1.2-0,  1.1-1,  1.1-0,  1.0-1,  1.0-0

depends attrs:

>=18.2

depends h5py:

>=2.8

depends libgcc-ng:

>=12

depends numpy:

>=1.12

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends pytorch:

>=1.7.1

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install simba_pbg

and update with::

   mamba update simba_pbg

To create a new environment, run:

mamba create --name myenvname simba_pbg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/simba_pbg:<tag>

(see `simba_pbg/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/simba_pbg/README.html)