recipe sistr_cmd

Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction

Homepage:

https://github.com/peterk87/sistr_cmd/

License:

APACHE / Apache-2.0

Recipe:

/sistr_cmd/meta.yaml

package sistr_cmd

Versions:

1.1.1-3,  1.1.1-2,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.2-5,  1.0.2-4,  1.0.2-3,  1.0.2-2, 

1.1.1-3,  1.1.1-2,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.2-5,  1.0.2-4,  1.0.2-3,  1.0.2-2,  1.0.2-0,  0.3.6-0,  0.3.4-0,  0.3.3-0,  0.3.1-0

Depends:

• blast

• mafft

• mash

• numpy >=1.11.1,<1.23.5

• pandas >=0.18.1,<=1.0.5

• pycurl >=7.43.0,<8

• pytables >=3.3.0

• python

• python-dateutil

• scipy >=1.1.0,<2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sistr_cmd

and update with:

conda update sistr_cmd

or use the docker container:

docker pull quay.io/biocontainers/sistr_cmd:<tag>

(see sistr_cmd/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sistr_cmd/README.html)