recipe skmer

Assembly-free and alignment-free tool for estimating genomic distances between genome-skims

Homepage:

https://github.com/shahab-sarmashghi/Skmer

License:

BSD / BSD-3-Clause

Recipe:

/skmer/meta.yaml

package skmer

Versions:

3.3.0-0,  3.2.1-0,  3.1.0-1,  3.1.0-0,  3.0.2-1,  3.0.2-0,  3.0.1-1,  3.0.1-0,  3.0.0-0, 

3.3.0-0,  3.2.1-0,  3.1.0-1,  3.1.0-0,  3.0.2-1,  3.0.2-0,  3.0.1-1,  3.0.1-0,  3.0.0-0,  2.0.2-3,  2.0.1-0,  2.0.0-0,  1.1.0-1,  1.1.0-0,  1.0.0-0

Depends:

• kmer-jellyfish 2.3

• mash 2.3

• numpy

• pandas

• python

• scipy

• seqtk 1.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install skmer

and update with:

conda update skmer

or use the docker container:

docker pull quay.io/biocontainers/skmer:<tag>

(see skmer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/skmer/README.html)