recipe slacken

Slacken is a very scalable implementation of the Kraken 2 metagenomic classification method, based on Apache Spark.

Homepage:

https://github.com/JNP-Solutions/Slacken

Documentation:

https://github.com/JNP-Solutions/Slacken/blob/v2.0.0/README.md

License:

GPL3 / GPL-3.0-only

Recipe:

/slacken/meta.yaml

Links:

doi: 10.1093/nargab/lqaf076

package slacken

(downloads) docker_slacken

versions:

2.0.0-0

depends openjdk:

>=17,<22

depends pyspark:

>=3.5.0,<4.0.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install slacken

and update with::

   mamba update slacken

To create a new environment, run:

mamba create --name myenvname slacken

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/slacken:<tag>

(see `slacken/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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