recipe smcounter2

smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers

Homepage

https://github.com/qiaseq/qiaseq-smcounter-v2

License

MIT

Recipe

/smcounter2/meta.yaml

package smcounter2

(downloads) docker_smcounter2

Versions

0.1.2018.08.28-1, 0.1.2018.08.28-0

Depends bedtools

Depends openpyxl

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-plyr

Depends scipy

Depends statistics

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install smcounter2

and update with:

conda update smcounter2

or use the docker container:

docker pull quay.io/biocontainers/smcounter2:<tag>

(see smcounter2/tags for valid values for <tag>)