recipe smoove

structural variant calling and genotyping with existing tools, but, smoothly

Homepage

https://github.com/brentp/smoove

License

Apache / Apache-2.0

Recipe

/smoove/meta.yaml

package smoove

(downloads) docker_smoove

Versions

0.2.3-1, 0.2.3-0, 0.1.9-0, 0.1.6-0, 0.1.5-0, 0.1.4-0, 0.1.3-0, 0.1.1-0

Depends bcftools

Depends duphold

Depends gsort

Depends htslib

Depends lumpy-sv

Depends mosdepth

Depends samtools

Depends svtools

Depends svtyper

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install smoove

and update with:

conda update smoove

or use the docker container:

docker pull quay.io/biocontainers/smoove:<tag>

(see smoove/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smoove/README.html)