recipe smoove

structural variant calling and genotyping with existing tools, but, smoothly

Homepage

https://github.com/brentp/smoove

License

Apache / Apache-2.0

Recipe

/smoove/meta.yaml

package smoove

Versions

0.2.8-0,  0.2.7-0,  0.2.6-1,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-1,  0.2.3-0,  0.1.9-0, 

0.2.8-0,  0.2.7-0,  0.2.6-1,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-1,  0.2.3-0,  0.1.9-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.1-0

Depends

• bcftools

• duphold

• gsort

• htslib

• lumpy-sv

• mosdepth

• samtools

• svtools

• svtyper

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install smoove

and update with:

conda update smoove

or use the docker container:

docker pull quay.io/biocontainers/smoove:<tag>

(see smoove/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smoove/README.html)