recipe snakemake

Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files. This package provides the full installation including all optional dependencies.

Homepage:https://snakemake.readthedocs.io
License:MIT
Recipe:/snakemake/meta.yaml
Links:doi: 10.1093/bioinformatics/bts480, biotools: Snakemake
package snakemake

(downloads) docker_snakemake

Versions:

5.4.2-0, 5.4.1-0, 5.4.0-0, 5.3.1-0, 5.3.0-2, 5.3.0-1, 5.2.4-1, 5.2.2-1, 5.2.1-0, 5.2.0-0, 5.1.5-0, 5.1.4-2, 5.1.4-0, 5.1.3-0, 5.1.2-0, 5.1.1-0, 5.0.0-0, 4.8.1-0, 4.8.0-0, 4.7.0-0, 4.6.0-0, 4.5.1-0, 4.5.0-0, 4.4.0-0, 4.3.1-0, 4.3.0-0, 4.2.0-0, 4.1.0-0, 4.0.0-1, 4.0.0-0, 3.13.3-0, 3.13.2-0, 3.13.0-1, 3.12.0-1, 3.11.2-1, 3.11.2-0, 3.11.1-1, 3.11.1-0, 3.11.0-1, 3.10.2-1, 3.10.1-1, 3.10.1-0, 3.10.0-0, 3.9.1-0, 3.9.0-0, 3.8.2-0, 3.8.1-0, 3.8.0-0, 3.7.1-0, 3.7.0-0, 3.6.1-0, 3.6.0-0, 3.5.5-1, 3.5.4-1, 3.5.3-1, 3.5.2-1, 3.5.1-1, 3.4.2-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snakemake

and update with:

conda update snakemake

or use the docker container:

docker pull quay.io/biocontainers/snakemake:<tag>

(see snakemake/tags for valid values for <tag>)