snippy

downloads

Rapid bacterial SNP calling and core genome alignments

Home https://github.com/tseemann/snippy
Versions 2.9, 3.0, 3.1
License GPL2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/snippy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snippy

and update with:

conda update snippy

docker

A Docker container is available at https://quay.io/repository/biocontainers/snippy.