recipe snp-pileup

Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets

Homepage:

https://github.com/mskcc/facets

License:

MIT / MIT

Recipe:

/snp-pileup/meta.yaml

package snp-pileup

Versions:

0.6.2-5,  0.6.2-4,  0.6.2-3,  0.6.2-2,  0.6.2-1,  0.6.2-0,  0.6.1-1,  0.6.1-0,  0.5.14-3, 

0.6.2-5,  0.6.2-4,  0.6.2-3,  0.6.2-2,  0.6.2-1,  0.6.2-0,  0.6.1-1,  0.6.1-0,  0.5.14-3,  0.5.14-2,  0.5.14-1,  0.5.14-0,  v0.5.14-0

Depends:

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

• cnv_facets

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install snp-pileup

and update with:

conda update snp-pileup

or use the docker container:

docker pull quay.io/biocontainers/snp-pileup:<tag>

(see snp-pileup/tags for valid values for <tag>)

Download stats

Link to this page

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