recipe snpeff

Genetic variant annotation and effect prediction toolbox

Homepage

http://snpeff.sourceforge.net/

License

LGPLv3

Recipe

/snpeff/meta.yaml

Links

biotools: snpeff

package snpeff

(downloads) docker_snpeff

Versions

4.3.1t-2, 4.3.1t-1, 4.3.1t-0, 4.3.1r-0, 4.3.1q-0, 4.3.1p-1, 4.3.1p-0, 4.3.1o-0, 4.3.1m-0, 4.3.1k-0, 4.3-3, 4.3-2, 4.3-1, 4.3-0, 4.3k-0, 4.3i-0, 4.3g-0, 4.3b-0, 4.2-0, 4.1l-5, 4.1l-4, 4.1l-3, 4.1l-2, 4.1l-1, 4.1l-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snpeff

and update with:

conda update snpeff

or use the docker container:

docker pull quay.io/biocontainers/snpeff:<tag>

(see snpeff/tags for valid values for <tag>)

Notes

The tool is available as command `snpEff`. Note that the package version is slightly different from upstream, this is to make sure conda will order the package versions correctly.