recipe soapcoverage

SOAPcoverarge can calculate sequencing coverage or physical coverage as well as duplication rate and details of specific block for each segments and whole genome by using SOAP, BLAT, BLAST, BlastZ, mum- mer and MAQ aligement results with multi-thread.

Homepage:

http://soap.genomics.org.cn/soapaligner.html

License:

GPL

Recipe:

/soapcoverage/meta.yaml

package soapcoverage

(downloads) docker_soapcoverage

Versions:

2.7.7-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install soapcoverage

and update with:

conda update soapcoverage

or use the docker container:

docker pull quay.io/biocontainers/soapcoverage:<tag>

(see soapcoverage/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/soapcoverage/README.html)