soapsplice

downloads

We have developed a tool SOAPsplice for genome-wide ab initio detection of splice junction sites from RNA-Seq, a method using new generation sequencing technologies to sequence the messenger RNA.

Home http://soap.genomics.org.cn/soapsplice.html
Versions 1.10
License freely available
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/soapsplice

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install soapsplice

and update with:

conda update soapsplice

docker

A Docker container is available at https://quay.io/repository/biocontainers/soapsplice.