spades

downloads

SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.

Home http://cab.spbu.ru/software/spades/
Versions 3.10.0, 3.10.1, 3.11.0, 3.11.1, 3.12.0, 3.5.0, 3.6.2, 3.7.0, 3.8.0, 3.8.1, 3.9.0
License GPLv2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/spades
Documentation http://cab.spbu.ru/files/release3.12.0/manual.html
Development https://github.com/ablab/spades
Links biotools: Spades, doi: 10.1089/cmb.2012.0021, doi: 10.1101/gr.213959.116

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install spades

and update with:

conda update spades

docker

A Docker container is available at https://quay.io/repository/biocontainers/spades.