- recipe spanki
Spanki is a set of tools to facilitate analysis of alternative splicing from RNA-Seq data. Spanki compiles quantitative and qualitative information about junction alignments from input BAM files, and analyzes junction-level splicing along with pairwise-defined splicing events. A simulator is also included to evaluate junction detection performance.
- Homepage:
- License:
GPLv3
- Recipe:
- package spanki¶
-
- Versions:
0.5.1-1
,0.5.1-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install spanki
and update with:
conda update spanki
or use the docker container:
docker pull quay.io/biocontainers/spanki:<tag>
(see spanki/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/spanki/README.html)