recipe spanki

Spanki is a set of tools to facilitate analysis of alternative splicing from RNA-Seq data. Spanki compiles quantitative and qualitative information about junction alignments from input BAM files, and analyzes junction-level splicing along with pairwise-defined splicing events. A simulator is also included to evaluate junction detection performance.

Homepage:

http://www.cbcb.umd.edu/software/spanki/

License:

GPLv3

Recipe:

/spanki/meta.yaml

package spanki

Versions:

0.5.1-1,  0.5.1-0

Depends:

• biopython

• cufflinks

• fisher

• numpy

• pyfasta

• pysam

• python >=2.7,<2.8.0a0

• samtools

• statsmodels

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install spanki

and update with:

conda update spanki

or use the docker container:

docker pull quay.io/biocontainers/spanki:<tag>

(see spanki/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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