spanki

downloads

Spanki is a set of tools to facilitate analysis of alternative splicing from RNA-Seq data. Spanki compiles quantitative and qualitative information about junction alignments from input BAM files, and analyzes junction-level splicing along with pairwise-defined splicing events. A simulator is also included to evaluate junction detection performance.

Home http://www.cbcb.umd.edu/software/spanki/
Versions 0.5.1
License GPLv3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/spanki

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install spanki

and update with:

conda update spanki

docker

A Docker container is available at https://quay.io/repository/biocontainers/spanki.