This is a stand-alone implementation of the new updated PRIDE Cluster algorithm. It is based on the spectra-cluster API and uses a highly similar logic as the Hadoop implementation spectra-cluster-hadoop used to build the PRIDE Cluster resource.
|License||Apache License, Version 2.0|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install spectra-cluster-cli
and update with:
conda update spectra-cluster-cli
spectra-cluster-cli is Java program that comes with a custom wrapper shell script. This shell wrapper is called “opsin” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “spectra-cluster-cli -Xms512m -Xmx1g”
A Docker container is available at https://quay.io/repository/biocontainers/spectra-cluster-cli.