spectra-cluster-cli

downloads

This is a stand-alone implementation of the new updated PRIDE Cluster algorithm. It is based on the spectra-cluster API and uses a highly similar logic as the Hadoop implementation spectra-cluster-hadoop used to build the PRIDE Cluster resource.

Home https://github.com/spectra-cluster/spectra-cluster-cli
Versions 1.0.1
License Apache License, Version 2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/spectra-cluster-cli

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install spectra-cluster-cli

and update with:

conda update spectra-cluster-cli

Notes

spectra-cluster-cli is Java program that comes with a custom wrapper shell script. This shell wrapper is called “opsin” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “spectra-cluster-cli -Xms512m -Xmx1g”

docker

A Docker container is available at https://quay.io/repository/biocontainers/spectra-cluster-cli.