- recipe spectrseqtools
SpectrSeqTools is a fully automatic analysis platform for sequencing small RNA molecules including post translational modifications measured via LC-MS/MS data.
- Homepage:
- License:
GPL-3.0-only
- Recipe:
- package spectrseqtools¶
- versions:
0.1.2-0- depends altair:
>=5.4.1,<6.0- depends clr_loader:
>=0.2.7.post0,<0.3- depends dbscan1d:
>=0.2.3,<0.3- depends loguru:
>=0.7.2,<0.8- depends mono:
>=6.12.0.199,<7- depends ms_deisotope:
>=0.0.60,<0.1- depends numpy:
>=2.2.3,<3.0- depends platformdirs:
>=4.3.8,<5.0- depends polars:
>=1.9.0,<2.0- depends pulp:
>=2.3.0,<3.0- depends python:
>=3.12,<3.14- depends pythonnet:
>=3.0.5,<4.0- depends pyyaml:
>=6.0.2,<7.0- depends scikit-learn:
>=1.7.2,<2.0- depends tqdm:
>=4.67.1,<5.0- depends typed-argument-parser:
>=1.10.1,<2.0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install spectrseqtools and update with:: mamba update spectrseqtools
To create a new environment, run:
mamba create --name myenvname spectrseqtools
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/spectrseqtools:<tag> (see `spectrseqtools/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/spectrseqtools/README.html)
