recipe spectrum_utils

Mass spectrometry utility functions

Homepage:

https://github.com/bittremieux/spectrum_utils

Documentation:

https://spectrum-utils.readthedocs.io/

License:

APACHE / Apache Software

Recipe:

/spectrum_utils/meta.yaml

package spectrum_utils

versions:

0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-2,  0.3.2-1,  0.3.2-0, 

0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-2,  0.3.2-1,  0.3.2-0,  0.3.0-0,  0.2.1-0,  0.2.0-0,  0.1.0-0

depends altair:

depends appdirs:

depends fastobo:

depends lark:

>=1.0

depends matplotlib-base:

depends numba:

>=0.47

depends numpy:

depends pandas:

depends pyteomics:

>=4.5

depends python:

>=3.8

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install spectrum_utils

and update with::

   mamba update spectrum_utils

To create a new environment, run:

mamba create --name myenvname spectrum_utils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/spectrum_utils:<tag>

(see `spectrum_utils/tags`_ for valid values for ``<tag>``)

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