recipe sprai

Sprai (single-pass read accuracy improver) is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads; instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Homepage

http://zombie.cb.k.u-tokyo.ac.jp/sprai/

License

MIT License

Recipe

/sprai/meta.yaml

package sprai

Versions

0.9.9.23-0

Depends

• blast

• libgcc

• perl 5.22.0*

• perl-app-cpanminus

• perl-module-build

• python 2.7*

• wgs-assembler

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sprai

and update with:

conda update sprai

or use the docker container:

docker pull quay.io/biocontainers/sprai:<tag>

(see sprai/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sprai/README.html)