Package Recipe 'squeegee'

recipe squeegee

squeegee, de novo computational contamination detection tool for metagenomic samples

Homepage:: https://gitlab.com/treangenlab/squeegee
License:: MIT
Recipe:: /squeegee/meta.yaml

package squeegee¶

Versions:

0.2.0-0, 0.1.3-0

Depends:

biopython
bowtie2 >=2.3.5
kraken >=1.1.1
mash >=2.2.2
meryl >=1.2
numpy
python >=3.6
samtools >=1.11

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install squeegee

and update with:

conda update squeegee

or use the docker container:

docker pull quay.io/biocontainers/squeegee:<tag>

(see squeegee/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/squeegee/README.html)