- recipe sr2silo
Short-read to SILO format converter.
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
sr2silo is a tool for converting short read data to SILO format, designed for bioinformatics applications.
- package sr2silo¶
- versions:
0.1.1-0,0.0.4-0- depends biopython:
>=1.83- depends boto3:
>=1.35.72- depends click:
>=8.1.8- depends moto:
>=5.0.22- depends psutil:
>=6.1.1- depends pydantic:
>=2.10.6- depends pysam:
>=0.23.0- depends python:
>=3.10- depends pyyaml:
>=6.0.2- depends requests:
>=2.25.0- depends tqdm:
>=4.67.1- depends typer:
>=0.15.1- depends zstandard:
>=0.23.0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install sr2silo and update with:: mamba update sr2silo
To create a new environment, run:
mamba create --name myenvname sr2silo
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/sr2silo:<tag> (see `sr2silo/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/sr2silo/README.html)
