recipe sra-tools

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Homepage:https://github.com/ncbi/sra-tools
License:Public Domain
Recipe:/sra-tools/meta.yaml
package sra-tools

(downloads) docker_sra-tools

Versions:

2.9.1_1-0, 2.9.1-0, 2.9.0-1, 2.8.2-1, 2.8.2-0, 2.8.1-0, 2.8.0-0, 2.7.0-0, 2.6.3-0, 2.6.2-0

Depends:
  • libgcc-ng >=4.9
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sra-tools

and update with:

conda update sra-tools

or use the docker container:

docker pull quay.io/biocontainers/sra-tools:<tag>

(see sra-tools/tags for valid values for <tag>)

Notes

After installation, you should run the configuration tool: ./vdb-config -i. This tool will setup your download/cache area for downloaded files and references.