sra-tools

downloads

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Home https://github.com/ncbi/sra-tools
Versions 2.6.2, 2.6.3, 2.7.0, 2.8.0, 2.8.1, 2.8.2
License Public Domain
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/sra-tools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sra-tools

and update with:

conda update sra-tools

Notes

This package includes ncbi-vdb and ngs-sdk. After installation, you should run the configuration tool: ./vdb-config -i. This tool will setup your download/cache area for downloaded files and references.

docker

A Docker container is available at https://quay.io/repository/biocontainers/sra-tools.