srst2

downloads

Short Read Sequence Typing for Bacterial Pathogens

Home https://github.com/katholt/srst2
Versions 0.1.4.6, 0.2.0
License BSD
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/srst2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install srst2

and update with:

conda update srst2

docker

A Docker container is available at https://quay.io/repository/biocontainers/srst2.