recipe ssuissero

Rapid Streptococcus suis serotyping pipeline for Nanopore Data

Homepage

https://github.com/jimmyliu1326/SsuisSero

License

MIT

Recipe

/ssuissero/meta.yaml

package ssuissero

Versions

1.0.1-1,  1.0.1-0,  1.0.0-1,  1.0.0-0

Depends

• blast

• flye

• freebayes

• medaka 1.0.1

• minipolish

• samtools

• vcflib

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ssuissero

and update with:

conda update ssuissero

or use the docker container:

docker pull quay.io/biocontainers/ssuissero:<tag>

(see ssuissero/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ssuissero/README.html)