recipe staramr

Scan genome contigs against the ResFinder and PointFinder databases

Homepage

https://github.com/phac-nml/staramr

License

APACHE / Apache Software License

Recipe

/staramr/meta.yaml

package staramr

Versions

0.7.2-0,  0.7.1-1,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.0-2, 

0.7.2-0,  0.7.1-1,  0.7.1-0,  0.7.0-0,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.0-2,  0.4.0-1,  0.4.0-0,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-1,  0.2.0-0,  0.1.0-0

Depends

• biopython >=1.70

• blast >=2.2.31

• coloredlogs >=10.0

• git

• gitpython >=2.1.3

• green >=2.13.0

• mlst

• numpy >=1.12.1

• pandas >=0.23.0

• python >=3

• xlsxwriter >=1.0.2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install staramr

and update with:

conda update staramr

or use the docker container:

docker pull quay.io/biocontainers/staramr:<tag>

(see staramr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/staramr/README.html)