recipe stellarscope

Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing

Homepage:

https://github.com/nixonlab/stellarscope

License:

MIT / MIT

Recipe:

/stellarscope/meta.yaml

Links:

doi: 10.1016/j.crmeth.2025.101086

package stellarscope

versions:

1.5-0

depends future:

>=0.17.1

depends intervaltree:

>=3.0.2

depends libgcc:

>=13

depends numpy:

depends packaging:

depends pandas:

depends pysam:

>=0.19

depends pysam:

>=0.23.3,<0.24.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends pyyaml:

>=5.1

depends samtools:

>=1.16

depends scipy:

>=1.2.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install stellarscope

and update with::

   mamba update stellarscope

To create a new environment, run:

mamba create --name myenvname stellarscope

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/stellarscope:<tag>

(see `stellarscope/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/stellarscope/README.html)