recipe strainest

Abundance estimation of strains

Homepage

https://github.com/compmetagen/strainest

License

GPL / GPL-3.0

Recipe

/strainest/meta.yaml

package strainest

Versions

1.2.4-4,  1.2.4-3,  1.2.4-2,  1.2.4-0,  1.2.2-0

Depends

• biopython >=1.50

• click >=5.1

• libcxx >=9.0.1

• matplotlib >=1.3.0

• mummer 3.23.*

• numpy >=1.7.0

• pandas

• pysam >=0.9

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• scikit-learn >=0.16.1

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install strainest

and update with:

conda update strainest

or use the docker container:

docker pull quay.io/biocontainers/strainest:<tag>

(see strainest/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/strainest/README.html)