recipe strainest

Abundance estimation of strains

Homepage:

https://github.com/compmetagen/strainest

License:

GPL / GPL-3.0

Recipe:

/strainest/meta.yaml

package strainest

versions:

1.2.4-4,  1.2.4-3,  1.2.4-2,  1.2.4-0,  1.2.2-0

depends biopython:

>=1.50

depends click:

>=5.1

depends libcxx:

>=9.0.1

depends matplotlib:

>=1.3.0

depends mummer:

3.23.*

depends numpy:

>=1.7.0

depends pandas:

depends pysam:

>=0.9

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends scikit-learn:

>=0.16.1

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install strainest

and update with::

   mamba update strainest

To create a new environment, run:

mamba create --name myenvname strainest

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/strainest:<tag>

(see `strainest/tags`_ for valid values for ``<tag>``)

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