recipe stream

STREAM Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data http://stream.pinellolab.org

Homepage

https://github.com/pinellolab/STREAM

License

AGPL-3

Recipe

/stream/meta.yaml

package stream

(downloads) docker_stream

Versions

0.3.9-0, 0.3.8-0, 0.3.7-1, 0.3.7-0, 0.3.6-1, 0.3.5-0, 0.3.4-0, 0.3.3-0, 0.3.2-2, 0.3.2-1, 0.3.2-0, 0.3.1-2, 0.3.1-1, 0.3.1-0, 0.3.0-0, 0.2.6-0, 0.2.5-0, 0.2.4-0, 0.2.3-0, 0.2.2-0, 0.2.1-0, 0.2.0-0

Depends anndata

Depends gunicorn

Depends libgcc-ng

>=7.3.0

Depends libgfortran-ng

>=7,<8.0a0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

3.0.2.*

Depends networkx

2.1.*

Depends numpy

Depends python

>=3.6,<3.7.0a0

Depends python-slugify

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-devtools

Depends r-distutils

Depends r-elpigraph.r

Depends r-essentials

Depends r-igraph

Depends r-kernsmooth

Depends r-rcpp

Depends r-rcpparmadillo

Depends r-vgam

Depends r-xml

Depends rpy2

Depends scikit-learn

Depends scipy

Depends seaborn

Depends shapely

Depends statsmodels

Depends umap-learn

Depends unzip

Depends zip

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stream

and update with:

conda update stream

or use the docker container:

docker pull quay.io/biocontainers/stream:<tag>

(see stream/tags for valid values for <tag>)