recipe stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST) directly from genome sequencing reads

Homepage

https://github.com/jordanlab/stringMLST

License

CC BY-NC-SA 4.0

Recipe

/stringmlst/meta.yaml

package stringmlst

(downloads) docker_stringmlst

Versions
0.6.3-00.6.2-10.6.2-00.6.1-00.5.1-00.5.1a-10.5.1a-00.4.2-00.4.1-0

0.6.3-00.6.2-10.6.2-00.6.1-00.5.1-00.5.1a-10.5.1a-00.4.2-00.4.1-00.4-00.3.7-00.3.6.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stringmlst

and update with:

conda update stringmlst

or use the docker container:

docker pull quay.io/biocontainers/stringmlst:<tag>

(see stringmlst/tags for valid values for <tag>)

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